I ended up deleting everything and reinstalling. (So I never really got to the true cause of the problem.)
It works now. Playing SOA2 of course. 
I'm not really a brute force delete and reinstall kind of guy. I prefer a mindful solution. [e digicons]-_-[/e]
But thank you for the help. I was so tired yesterday and just wanted to have a little fun before heading to bed. As it turned out I ended up playing till 5 am this morning. I would have been better off if it hadn't worked. [e digicons]X|[/e]
Heading up Starfleet and protecting us all from the Borg is a terrible burden to bare. [e digicons]
[/e]
backs out of the room slowly... [e digicons]*_*[/e] [e digicons]:borg:[/e]